IL_1S72_065

3D structure

PDB id

1S72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

1S72|1|0|A|1857, 1S72|1|0|C|1872, 1S72|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71229.2

Basepair signature

cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

1S72|1|0|C|1854
1S72|1|0|G|1855
1S72|1|0|C|1856
1S72|1|0|A|1857
1S72|1|0|A|1858
1S72|1|0|A|1859
1S72|1|0|U|1860
*
1S72|1|0|A|1869
1S72|1|0|C|1870
1S72|1|0|U|1871
1S72|1|0|C|1872
1S72|1|0|G|1873
1S72|1|0|U|1874
1S72|1|0|A|1875
1S72|1|0|C|1876
1S72|1|0|G|1877

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae