IL_1SA9_001

3D structure

PDB id

1SA9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the RNA octamer GGCGAGCC

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_13959.8

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

39

Unit IDs

1SA9|1|A|C|103
1SA9|1|A|G|104
1SA9|1|A|A|105
1SA9|1|A|G|106
*
1SA9|1|B|C|111
1SA9|1|B|G|112
1SA9|1|B|A|113
1SA9|1|B|G|114

Current chains

Chain A

5'-R(*GP*GP*CP*GP*AP*GP*CP*C)-3'

Chain B

5'-R(*GP*GP*CP*GP*AP*GP*CP*C)-3'

Nearby chains