IL_1SAQ_007

3D structure

PDB id

1SAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the RNA octamer GIC(GA)GCC

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GICGAGCC*GICGAGCC

Length

16 nucleotides

Bulged bases

1SAQ|1|E|I|302, 1SAQ|1|E|I|302||||4_655

QA status

Modified nucleotides:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1SAQ|1|E|G|301
1SAQ|1|E|I|302
1SAQ|1|E|C|303
1SAQ|1|E|G|304
1SAQ|1|E|A|305
1SAQ|1|E|G|306
1SAQ|1|E|C|307
1SAQ|1|E|C|308
*
1SAQ|1|E|G|301||||4_655
1SAQ|1|E|I|302||||4_655
1SAQ|1|E|C|303||||4_655
1SAQ|1|E|G|304||||4_655
1SAQ|1|E|A|305||||4_655
1SAQ|1|E|G|306||||4_655
1SAQ|1|E|C|307||||4_655
1SAQ|1|E|C|308||||4_655

Current chains

Chain E

5'-R(*GP*IP*CP*GP*AP*GP*CP*C)-3'

Nearby chains

Chain A

5'-R(*GP*IP*CP*GP*AP*GP*CP*C)-3'

Chain B

5'-R(*GP*IP*CP*GP*AP*GP*CP*C)-3'