IL_1SM1_033

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_033 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.1943

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

1SM1|1|0|G|957
1SM1|1|0|G|958
1SM1|1|0|C|959
*
1SM1|1|0|G|980
1SM1|1|0|C|981
1SM1|1|0|C|982

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain X

50S RIBOSOMAL PROTEIN L30