IL_1SM1_038

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

1SM1|1|0|U|1023

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_038 not in the Motif Atlas

Homologous match to IL_5J7L_279

Geometric discrepancy: 0.3436

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

1SM1|1|0|A|1022
1SM1|1|0|U|1023
1SM1|1|0|G|1024
*
1SM1|1|0|C|1160
1SM1|1|0|U|1161

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain H

50S RIBOSOMAL PROTEIN L13

Chain O

50S RIBOSOMAL PROTEIN L20