IL_1SM1_039

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CUCAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

1SM1|1|0|C|1031, 1SM1|1|0|C|1152, 1SM1|1|0|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_039 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.4988

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

1SM1|1|0|C|1029
1SM1|1|0|U|1030
1SM1|1|0|C|1031
1SM1|1|0|A|1032
1SM1|1|0|G|1033
1SM1|1|0|U|1034
1SM1|1|0|G|1035
*
1SM1|1|0|C|1150
1SM1|1|0|U|1151
1SM1|1|0|C|1152
1SM1|1|0|A|1153
1SM1|1|0|A|1154
1SM1|1|0|G|1155

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain E

50S RIBOSOMAL PROTEIN L6

Chain H

50S RIBOSOMAL PROTEIN L13