IL_1SM1_052

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_052 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.3237

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

1SM1|1|0|A|1275
1SM1|1|0|U|1276
1SM1|1|0|G|1277
1SM1|1|0|A|1278
1SM1|1|0|G|1279
1SM1|1|0|U|1280
1SM1|1|0|A|1281
1SM1|1|0|A|1282
*
1SM1|1|0|U|1994
1SM1|1|0|G|1995
1SM1|1|0|A|1996
1SM1|1|0|A|1997
1SM1|1|0|A|1998
1SM1|1|0|U|1999
1SM1|1|0|U|2000

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4

Chain Q

50S RIBOSOMAL PROTEIN L22

Chain Z

50S RIBOSOMAL PROTEIN L32