IL_1SM1_075
3D structure
- PDB id
- 1SM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- UGCCAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 1SM1|1|0|G|1790, 1SM1|1|0|C|1792, 1SM1|1|0|C|1808, 1SM1|1|0|U|1812
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1SM1_075 not in the Motif Atlas
- Homologous match to IL_4WF9_069
- Geometric discrepancy: 0.4563
- The information below is about IL_4WF9_069
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.5
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
1SM1|1|0|U|1789
1SM1|1|0|G|1790
1SM1|1|0|C|1791
1SM1|1|0|C|1792
1SM1|1|0|A|1793
1SM1|1|0|A|1794
1SM1|1|0|C|1795
*
1SM1|1|0|G|1805
1SM1|1|0|G|1806
1SM1|1|0|A|1807
1SM1|1|0|C|1808
1SM1|1|0|G|1809
1SM1|1|0|U|1810
1SM1|1|0|A|1811
1SM1|1|0|U|1812
1SM1|1|0|A|1813
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain A
- 50S RIBOSOMAL PROTEIN L2
Coloring options: