IL_1SM1_075

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

1SM1|1|0|G|1790, 1SM1|1|0|C|1792, 1SM1|1|0|C|1808, 1SM1|1|0|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_075 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.4563

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1SM1|1|0|U|1789
1SM1|1|0|G|1790
1SM1|1|0|C|1791
1SM1|1|0|C|1792
1SM1|1|0|A|1793
1SM1|1|0|A|1794
1SM1|1|0|C|1795
*
1SM1|1|0|G|1805
1SM1|1|0|G|1806
1SM1|1|0|A|1807
1SM1|1|0|C|1808
1SM1|1|0|G|1809
1SM1|1|0|U|1810
1SM1|1|0|A|1811
1SM1|1|0|U|1812
1SM1|1|0|A|1813

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2