IL_1SM1_078

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

1SM1|1|0|A|1839, 1SM1|1|0|A|1840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_078 not in the Motif Atlas

Homologous match to IL_4WF9_072

Geometric discrepancy: 0.4898

The information below is about IL_4WF9_072

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

1SM1|1|0|G|1838
1SM1|1|0|A|1839
1SM1|1|0|A|1840
1SM1|1|0|G|1841
*
1SM1|1|0|C|1876
1SM1|1|0|C|1877

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains