IL_1SM1_080

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UGGAG*CGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_080 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.321

The information below is about IL_7A0S_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

1SM1|1|0|U|1848
1SM1|1|0|G|1849
1SM1|1|0|G|1850
1SM1|1|0|A|1851
1SM1|1|0|G|1852
*
1SM1|1|0|C|1865
1SM1|1|0|G|1866
1SM1|1|0|A|1867
1SM1|1|0|A|1868
1SM1|1|0|A|1869

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain Y

50S RIBOSOMAL PROTEIN L31