IL_1SM1_083

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

1SM1|1|0|U|1926, 1SM1|1|0|U|1927, 1SM1|1|0|U|1946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_083 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.4629

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1SM1|1|0|C|1917
1SM1|1|0|G|1918
1SM1|1|0|A|1919
1SM1|1|0|A|1920
1SM1|1|0|A|1921
1SM1|1|0|U|1922
1SM1|1|0|U|1923
1SM1|1|0|C|1924
1SM1|1|0|C|1925
1SM1|1|0|U|1926
1SM1|1|0|U|1927
1SM1|1|0|G|1928
*
1SM1|1|0|C|1944
1SM1|1|0|C|1945
1SM1|1|0|U|1946
1SM1|1|0|G|1947

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains