IL_1SM1_097

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CAA*UGUAG

Length

8 nucleotides

Bulged bases

1SM1|1|0|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_097 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.2329

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

1SM1|1|0|C|2276
1SM1|1|0|A|2277
1SM1|1|0|A|2278
*
1SM1|1|0|U|2296
1SM1|1|0|G|2297
1SM1|1|0|U|2298
1SM1|1|0|A|2299
1SM1|1|0|G|2300

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain D

50S RIBOSOMAL PROTEIN L5

Chain M

50S RIBOSOMAL PROTEIN L18