IL_1SM1_099

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GUAC*GGC

Length

7 nucleotides

Bulged bases

1SM1|1|0|A|2381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_099 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2116

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

1SM1|1|0|G|2379
1SM1|1|0|U|2380
1SM1|1|0|A|2381
1SM1|1|0|C|2382
*
1SM1|1|0|G|2393
1SM1|1|0|G|2394
1SM1|1|0|C|2395

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L33

Chain J

50S RIBOSOMAL PROTEIN L15