IL_1SM1_114
3D structure
- PDB id
- 1SM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- UGG*CUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1SM1_114 not in the Motif Atlas
- Geometric match to IL_3SJ2_001
- Geometric discrepancy: 0.142
- The information below is about IL_3SJ2_001
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
1SM1|1|0|U|2663
1SM1|1|0|G|2664
1SM1|1|0|G|2665
*
1SM1|1|0|C|2703
1SM1|1|0|U|2704
1SM1|1|0|A|2705
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B
- 50S RIBOSOMAL PROTEIN L3
- Chain I
- 50S RIBOSOMAL PROTEIN L14
- Chain L
- 50S RIBOSOMAL PROTEIN L17
- Chain N
- 50S RIBOSOMAL PROTEIN L19
Coloring options: