IL_1SM1_117

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_117 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.2079

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

1SM1|1|0|G|2717
1SM1|1|0|A|2718
1SM1|1|0|U|2719
1SM1|1|0|A|2720
1SM1|1|0|A|2721
1SM1|1|0|C|2722
*
1SM1|1|0|G|2742
1SM1|1|0|G|2743
1SM1|1|0|A|2744
1SM1|1|0|A|2745
1SM1|1|0|G|2746
1SM1|1|0|C|2747

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain E

50S RIBOSOMAL PROTEIN L6

Chain H

50S RIBOSOMAL PROTEIN L13