IL_1SM1_128
3D structure
- PDB id
- 1SM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- GGUUAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 1SM1|1|0|U|1037, 1SM1|1|0|A|1138, 1SM1|1|0|U|1141
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1SM1_128 not in the Motif Atlas
- Geometric match to IL_7A0S_037
- Geometric discrepancy: 0.3323
- The information below is about IL_7A0S_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
1SM1|1|0|G|1035
1SM1|1|0|G|1036
1SM1|1|0|U|1037
1SM1|1|0|U|1038
1SM1|1|0|A|1039
1SM1|1|0|A|1040
1SM1|1|0|G|1041
*
1SM1|1|0|C|1135
1SM1|1|0|G|1136
1SM1|1|0|A|1137
1SM1|1|0|A|1138
1SM1|1|0|A|1139
1SM1|1|0|A|1140
1SM1|1|0|U|1141
1SM1|1|0|G|1142
1SM1|1|0|A|1143
1SM1|1|0|U|1144
1SM1|1|0|C|1145
1SM1|1|0|G|1146
1SM1|1|0|G|1147
1SM1|1|0|G|1148
1SM1|1|0|G|1149
1SM1|1|0|C|1150
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 4
- 50S RIBOSOMAL PROTEIN L36
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain B
- 50S RIBOSOMAL PROTEIN L3
- Chain H
- 50S RIBOSOMAL PROTEIN L13
- Chain K
- 50S RIBOSOMAL PROTEIN L16
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