IL_1SM1_133

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UGUUGAC*GUUUAG

Length

13 nucleotides

Bulged bases

1SM1|1|0|G|858, 1SM1|1|0|U|859, 1SM1|1|0|U|943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1SM1|1|0|U|857
1SM1|1|0|G|858
1SM1|1|0|U|859
1SM1|1|0|U|860
1SM1|1|0|G|861
1SM1|1|0|A|862
1SM1|1|0|C|863
*
1SM1|1|0|G|940
1SM1|1|0|U|941
1SM1|1|0|U|942
1SM1|1|0|U|943
1SM1|1|0|A|944
1SM1|1|0|G|945

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain X

50S RIBOSOMAL PROTEIN L30