IL_1SM1_135

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CCGCGGAGAAG*UGGAGCCG

Length

19 nucleotides

Bulged bases

1SM1|1|0|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1SM1|1|0|C|1218
1SM1|1|0|C|1219
1SM1|1|0|G|1220
1SM1|1|0|C|1221
1SM1|1|0|G|1222
1SM1|1|0|G|1223
1SM1|1|0|A|1224
1SM1|1|0|G|1225
1SM1|1|0|A|1226
1SM1|1|0|A|1227
1SM1|1|0|G|1228
*
1SM1|1|0|U|1247
1SM1|1|0|G|1248
1SM1|1|0|G|1249
1SM1|1|0|A|1250
1SM1|1|0|G|1251
1SM1|1|0|C|1252
1SM1|1|0|C|1253
1SM1|1|0|G|1254

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4

Chain J

50S RIBOSOMAL PROTEIN L15

Chain O

50S RIBOSOMAL PROTEIN L20

Chain Q

50S RIBOSOMAL PROTEIN L22