IL_1SM1_151

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GGGACG*CCAAGAAAAGC

Length

17 nucleotides

Bulged bases

1SM1|1|0|A|1441, 1SM1|1|0|C|1442, 1SM1|1|0|A|1582, 1SM1|1|0|A|1583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1SM1|1|0|G|1438
1SM1|1|0|G|1439
1SM1|1|0|G|1440
1SM1|1|0|A|1441
1SM1|1|0|C|1442
1SM1|1|0|G|1443
*
1SM1|1|0|C|1580
1SM1|1|0|C|1581
1SM1|1|0|A|1582
1SM1|1|0|A|1583
1SM1|1|0|G|1584
1SM1|1|0|A|1585
1SM1|1|0|A|1586
1SM1|1|0|A|1587
1SM1|1|0|A|1588
1SM1|1|0|G|1589
1SM1|1|0|C|1590

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2