IL_1U6P_054

3D structure

PDB id

1U6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR Structure of the MLV encapsidation signal bound to the Nucleocapsid protein

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGG,CCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1U6P_054 not in the Motif Atlas

Geometric match to IL_5TBW_016

Geometric discrepancy: 0.2325

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

1U6P|14|B|C|311
1U6P|14|B|G|312
1U6P|14|B|G|313
*
1U6P|14|B|C|349
1U6P|14|B|C|350
1U6P|14|B|G|351

Current chains

Chain B

101-MER

Nearby chains

Chain A

Gag polyprotein