IL_1VBY_001

3D structure

PDB id

1VBY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, and Mn2+ bound

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUGGUCCCAG*CG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06376.1

Basepair signature

cWW-L-L-L-L-L-L-L-L-L-cWW

Number of instances in this motif group

2

Unit IDs

1VBY|1|B|C|107
1VBY|1|B|A|108
1VBY|1|B|U|109
1VBY|1|B|G|110
1VBY|1|B|G|111
1VBY|1|B|U|112
1VBY|1|B|C|113
1VBY|1|B|C|114
1VBY|1|B|C|115
1VBY|1|B|A|116
1VBY|1|B|G|117
*
1VBY|1|B|C|130
1VBY|1|B|G|131

Current chains

Chain B

Hepatitis Delta virus ribozyme

Nearby chains