IL_1VQ4_040

3D structure

PDB id

1VQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DAA' bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

1VQ4|1|0|U|1109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ4_040 not in the Motif Atlas

Homologous match to IL_4V9F_039

Geometric discrepancy: 0.0633

The information below is about IL_4V9F_039

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

1VQ4|1|0|G|1108
1VQ4|1|0|U|1109
1VQ4|1|0|G|1110
*
1VQ4|1|0|C|1253
1VQ4|1|0|C|1254

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain J

50S ribosomal protein L13P

Chain W

50S ribosomal protein L30P