IL_1VQ4_095

3D structure

PDB id

1VQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DAA' bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAC*GCAC

Length

7 nucleotides

Bulged bases

1VQ4|1|0|A|2902

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ4_095 not in the Motif Atlas

Homologous match to IL_4V9F_097

Geometric discrepancy: 0.0546

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

1VQ4|1|0|G|2855
1VQ4|1|0|A|2856
1VQ4|1|0|C|2857
*
1VQ4|1|0|G|2900
1VQ4|1|0|C|2901
1VQ4|1|0|A|2902
1VQ4|1|0|C|2903

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain X

50S ribosomal protein L31e