IL_1VQ5_088

3D structure

PDB id

1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

1VQ5|1|0|A|2637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ5_088 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.0761

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

1VQ5|1|0|C|2626
1VQ5|1|0|G|2627
*
1VQ5|1|0|C|2636
1VQ5|1|0|A|2637
1VQ5|1|0|G|2638

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 4

5'-D(*(DC)P*(DC)P*(5AA)P*(2OP)P*(PO2)P*AP*C*C)-3')

Chain A

50S ribosomal protein L2P