IL_1VQ5_105
3D structure
- PDB id
- 1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAG*CAAUGUG
- Length
- 12 nucleotides
- Bulged bases
- 1VQ5|1|0|U|263
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQ5_105 not in the Motif Atlas
- Homologous match to IL_4V9F_108
- Geometric discrepancy: 0.0324
- The information below is about IL_4V9F_108
- Detailed Annotation
- Kink-turn with embedded cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_65996.1
- Basepair signature
- cWW-L-cWW-L-tSH-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
1VQ5|1|0|C|245
1VQ5|1|0|G|246
1VQ5|1|0|A|247
1VQ5|1|0|A|248
1VQ5|1|0|G|249
*
1VQ5|1|0|C|260
1VQ5|1|0|A|261
1VQ5|1|0|A|262
1VQ5|1|0|U|263
1VQ5|1|0|G|264
1VQ5|1|0|U|265
1VQ5|1|0|G|266
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain F
- 50S ribosomal protein L7AE
- Chain M
- 50S Ribosomal Protein L15E
Coloring options: