IL_1VQ5_108

3D structure

PDB id

1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAUUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ5_108 not in the Motif Atlas

Homologous match to IL_4V9F_111

Geometric discrepancy: 0.0304

The information below is about IL_4V9F_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

1VQ5|1|0|G|1744
1VQ5|1|0|G|1745
1VQ5|1|0|A|1746
1VQ5|1|0|A|1747
1VQ5|1|0|U|1748
1VQ5|1|0|U|1749
1VQ5|1|0|C|1750
1VQ5|1|0|G|1751
1VQ5|1|0|G|1752
*
1VQ5|1|0|C|2031
1VQ5|1|0|U|2032
1VQ5|1|0|G|2033
1VQ5|1|0|U|2034
1VQ5|1|0|C|2035

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P