IL_1VQ6_105

3D structure

PDB id

1VQ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of c-hpmn and CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAG*CAAUGUG

Length

12 nucleotides

Bulged bases

1VQ6|1|0|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ6_105 not in the Motif Atlas

Homologous match to IL_4V9F_108

Geometric discrepancy: 0.0383

The information below is about IL_4V9F_108

Detailed Annotation

Kink-turn with embedded cWW pair

Broad Annotation

No text annotation

Motif group

IL_65996.1

Basepair signature

cWW-L-cWW-L-tSH-R-cWW

Number of instances in this motif group

4

Unit IDs

1VQ6|1|0|C|245
1VQ6|1|0|G|246
1VQ6|1|0|A|247
1VQ6|1|0|A|248
1VQ6|1|0|G|249
*
1VQ6|1|0|C|260
1VQ6|1|0|A|261
1VQ6|1|0|A|262
1VQ6|1|0|U|263
1VQ6|1|0|G|264
1VQ6|1|0|U|265
1VQ6|1|0|G|266

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain F

50S ribosomal protein L7AE

Chain M

50S Ribosomal Protein L15E