IL_1VQ7_009

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

AG*CAAUGU

Length

8 nucleotides

Bulged bases

1VQ7|1|0|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ7_009 not in the Motif Atlas

Geometric match to IL_4V9F_009

Geometric discrepancy: 0.0355

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92634.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

1VQ7|1|0|A|248
1VQ7|1|0|G|249
*
1VQ7|1|0|C|260
1VQ7|1|0|A|261
1VQ7|1|0|A|262
1VQ7|1|0|U|263
1VQ7|1|0|G|264
1VQ7|1|0|U|265

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain F

50S ribosomal protein L7AE

Chain M

50S Ribosomal Protein L15E