IL_1VQ7_011

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUCUCAUC*GUGCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ7_011 not in the Motif Atlas

Homologous match to IL_4V9F_011

Geometric discrepancy: 0.4213

The information below is about IL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

1VQ7|1|0|C|280
1VQ7|1|0|U|281
1VQ7|1|0|C|282
1VQ7|1|0|U|283
1VQ7|1|0|C|284
1VQ7|1|0|A|285
1VQ7|1|0|U|286
1VQ7|1|0|C|287
*
1VQ7|1|0|G|365
1VQ7|1|0|U|366
1VQ7|1|0|G|367
1VQ7|1|0|C|368
1VQ7|1|0|G|369

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain M

50S Ribosomal Protein L15E