IL_1VQ7_044

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGUGAG*CUACCC

Length

12 nucleotides

Bulged bases

1VQ7|1|0|G|1165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VQ7|1|0|G|1162
1VQ7|1|0|G|1163
1VQ7|1|0|U|1164
1VQ7|1|0|G|1165
1VQ7|1|0|A|1166
1VQ7|1|0|G|1167
*
1VQ7|1|0|C|1179
1VQ7|1|0|U|1180
1VQ7|1|0|A|1181
1VQ7|1|0|C|1182
1VQ7|1|0|C|1183
1VQ7|1|0|C|1184

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L11P