IL_1VQ7_063

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGUACC*GAAGAAG

Length

13 nucleotides

Bulged bases

1VQ7|1|0|G|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ7_063 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0348

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

1VQ7|1|0|C|1764
1VQ7|1|0|G|1765
1VQ7|1|0|U|1766
1VQ7|1|0|A|1767
1VQ7|1|0|C|1768
1VQ7|1|0|C|1769
*
1VQ7|1|0|G|1774
1VQ7|1|0|A|1775
1VQ7|1|0|A|1776
1VQ7|1|0|G|1777
1VQ7|1|0|A|1778
1VQ7|1|0|A|1779
1VQ7|1|0|G|1780

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain P

50S ribosomal protein L19E

Chain Z

50S ribosomal protein L37Ae