IL_1VQ7_077

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAG,CUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ7_077 not in the Motif Atlas

Geometric match to IL_4ZC7_004

Geometric discrepancy: 0.2127

The information below is about IL_4ZC7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

1VQ7|1|0|G|2134
1VQ7|1|0|A|2135
1VQ7|1|0|G|2136
*
1VQ7|1|0|C|2239
1VQ7|1|0|U|2240
1VQ7|1|0|C|2241

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain M

50S Ribosomal Protein L15E