IL_1VQ7_086
3D structure
- PDB id
- 1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- UUC*GUGAG
- Length
- 8 nucleotides
- Bulged bases
- 1VQ7|1|0|G|2611, 1VQ7|1|0|A|2612
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQ7_086 not in the Motif Atlas
- Homologous match to IL_4V9F_087
- Geometric discrepancy: 0.0447
- The information below is about IL_4V9F_087
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
1VQ7|1|0|U|2545
1VQ7|1|0|U|2546
1VQ7|1|0|C|2547
*
1VQ7|1|0|G|2609
1VQ7|1|0|U|2610
1VQ7|1|0|G|2611
1VQ7|1|0|A|2612
1VQ7|1|0|G|2613
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 4
- 5'-R(*CP*CP*(5AA)P*(2OP)P*(PAE)P*AP*C*C)-3')
- Chain B
- 50S ribosomal protein L3P
- Chain K
- 50S ribosomal protein L14P
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