IL_1VQ7_093

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

1VQ7|1|0|U|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ7_093 not in the Motif Atlas

Homologous match to IL_4V9F_094

Geometric discrepancy: 0.0484

The information below is about IL_4V9F_094

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

1VQ7|1|0|U|2724
1VQ7|1|0|G|2725
1VQ7|1|0|U|2726
1VQ7|1|0|A|2727
1VQ7|1|0|C|2728
*
1VQ7|1|0|G|2754
1VQ7|1|0|G|2755
1VQ7|1|0|U|2756
1VQ7|1|0|A|2757
1VQ7|1|0|G|2758

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain U

50S ribosomal protein L24E

Chain X

50S ribosomal protein L31e