IL_1VQ8_014

3D structure

PDB id

1VQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

1VQ8|1|0|U|308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ8_014 not in the Motif Atlas

Homologous match to IL_4V9F_013

Geometric discrepancy: 0.0809

The information below is about IL_4V9F_013

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

1VQ8|1|0|G|307
1VQ8|1|0|U|308
1VQ8|1|0|C|309
*
1VQ8|1|0|G|322
1VQ8|1|0|C|323

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain T

50S ribosomal protein L24P

Chain Y

50S ribosomal protein L32E