IL_1VQ8_015
3D structure
- PDB id
- 1VQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.2 Å
Loop
- Sequence
- GUACC*GAGGCGAAAUAGAGC
- Length
- 20 nucleotides
- Bulged bases
- 1VQ8|1|0|U|510, 1VQ8|1|0|G|514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQ8_015 not in the Motif Atlas
- Geometric match to IL_4V9F_014
- Geometric discrepancy: 0.09
- The information below is about IL_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31504.1
- Basepair signature
- cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
1VQ8|1|0|G|487
1VQ8|1|0|U|488
1VQ8|1|0|A|489
1VQ8|1|0|C|490
1VQ8|1|0|C|491
*
1VQ8|1|0|G|501
1VQ8|1|0|A|502
1VQ8|1|0|G|503
1VQ8|1|0|G|504
1VQ8|1|0|C|505
1VQ8|1|0|G|506
1VQ8|1|0|A|507
1VQ8|1|0|A|508
1VQ8|1|0|A|509
1VQ8|1|0|U|510
1VQ8|1|0|A|511
1VQ8|1|0|G|512
1VQ8|1|0|A|513
1VQ8|1|0|G|514
1VQ8|1|0|C|515
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 2
- 50S ribosomal protein L39e
- Chain R
- 50S ribosomal protein L22P
- Chain T
- 50S ribosomal protein L24P
Coloring options: