IL_1VQK_006
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- AGAACUG*CUCAGUAU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQK_006 not in the Motif Atlas
- Homologous match to IL_4V9F_006
- Geometric discrepancy: 0.04
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
1VQK|1|0|A|158
1VQK|1|0|G|159
1VQK|1|0|A|160
1VQK|1|0|A|161
1VQK|1|0|C|162
1VQK|1|0|U|163
1VQK|1|0|G|164
*
1VQK|1|0|C|171
1VQK|1|0|U|172
1VQK|1|0|C|173
1VQK|1|0|A|174
1VQK|1|0|G|175
1VQK|1|0|U|176
1VQK|1|0|A|177
1VQK|1|0|U|178
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 3
- 50S ribosomal protein L44E
- Chain C
- 50S ribosomal protein L4E
- Chain L
- 50S ribosomal protein L15P
- Chain M
- 50S Ribosomal Protein L15E
Coloring options: