IL_1VQK_018

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CUCG*CACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQK_018 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.1962

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

1VQK|1|0|C|558
1VQK|1|0|U|559
1VQK|1|0|C|560
1VQK|1|0|G|561
*
1VQK|1|0|C|596
1VQK|1|0|A|597
1VQK|1|0|C|598
1VQK|1|0|G|599

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain Y

50S ribosomal protein L32E