IL_1VQK_025
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GAAUC*GCAACAGC
- Length
- 13 nucleotides
- Bulged bases
- 1VQK|1|0|A|894, 1VQK|1|0|G|898
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQK_025 not in the Motif Atlas
- Geometric match to IL_4V9F_024
- Geometric discrepancy: 0.0471
- The information below is about IL_4V9F_024
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
1VQK|1|0|G|765
1VQK|1|0|A|766
1VQK|1|0|A|767
1VQK|1|0|U|768
1VQK|1|0|C|769
*
1VQK|1|0|G|892
1VQK|1|0|C|893
1VQK|1|0|A|894
1VQK|1|0|A|895
1VQK|1|0|C|896
1VQK|1|0|A|897
1VQK|1|0|G|898
1VQK|1|0|C|899
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain C
- 50S ribosomal protein L4E
- Chain L
- 50S ribosomal protein L15P
- Chain M
- 50S Ribosomal Protein L15E
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