IL_1VQK_046

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGC*GACG

Length

7 nucleotides

Bulged bases

1VQK|1|0|A|1352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQK_046 not in the Motif Atlas

Homologous match to IL_4V9F_046

Geometric discrepancy: 0.0537

The information below is about IL_4V9F_046

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

1VQK|1|0|C|1301
1VQK|1|0|G|1302
1VQK|1|0|C|1303
*
1VQK|1|0|G|1351
1VQK|1|0|A|1352
1VQK|1|0|C|1353
1VQK|1|0|G|1354

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain C

50S ribosomal protein L4E

Chain L

50S ribosomal protein L15P

Chain Y

50S ribosomal protein L32E