IL_1VQK_062
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- AUUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 1VQK|1|0|G|2033
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQK_062 not in the Motif Atlas
- Geometric match to IL_4V9F_062
- Geometric discrepancy: 0.059
- The information below is about IL_4V9F_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
1VQK|1|0|A|1747
1VQK|1|0|U|1748
1VQK|1|0|U|1749
1VQK|1|0|C|1750
1VQK|1|0|G|1751
1VQK|1|0|G|1752
*
1VQK|1|0|C|2031
1VQK|1|0|U|2032
1VQK|1|0|G|2033
1VQK|1|0|U|2034
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain K
- 50S ribosomal protein L14P
Coloring options: