IL_1VQK_080

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQK_080 not in the Motif Atlas

Geometric match to IL_4WF9_089

Geometric discrepancy: 0.1796

The information below is about IL_4WF9_089

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

1VQK|1|0|A|2488
1VQK|1|0|G|2489
*
1VQK|1|0|C|2533
1VQK|1|0|C|2534
1VQK|1|0|U|2535

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 4

5'-R(*CP*CP*(DA)*(PHE)*(ACA))-3'