IL_1VQK_106

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGAAG*CAAUGUG

Length

12 nucleotides

Bulged bases

1VQK|1|0|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQK_106 not in the Motif Atlas

Homologous match to IL_4V9F_108

Geometric discrepancy: 0.0329

The information below is about IL_4V9F_108

Detailed Annotation

Kink-turn with embedded cWW pair

Broad Annotation

No text annotation

Motif group

IL_65996.1

Basepair signature

cWW-L-cWW-L-tSH-R-cWW

Number of instances in this motif group

4

Unit IDs

1VQK|1|0|C|245
1VQK|1|0|G|246
1VQK|1|0|A|247
1VQK|1|0|A|248
1VQK|1|0|G|249
*
1VQK|1|0|C|260
1VQK|1|0|A|261
1VQK|1|0|A|262
1VQK|1|0|U|263
1VQK|1|0|G|264
1VQK|1|0|U|265
1VQK|1|0|G|266

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain F

50S ribosomal protein L7AE

Chain M

50S Ribosomal Protein L15E