IL_1VQL_009

3D structure

PDB id

1VQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCSN' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

AG*CAAUGU

Length

8 nucleotides

Bulged bases

1VQL|1|0|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQL_009 not in the Motif Atlas

Geometric match to IL_4V9F_009

Geometric discrepancy: 0.0445

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

1VQL|1|0|A|248
1VQL|1|0|G|249
*
1VQL|1|0|C|260
1VQL|1|0|A|261
1VQL|1|0|A|262
1VQL|1|0|U|263
1VQL|1|0|G|264
1VQL|1|0|U|265

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain F

50S ribosomal protein L7AE

Chain M

50S Ribosomal Protein L15E