IL_1VQL_089

3D structure

PDB id

1VQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCSN' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQL_089 not in the Motif Atlas

Geometric match to IL_1Z7F_006

Geometric discrepancy: 0.174

The information below is about IL_1Z7F_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

1VQL|1|0|G|2623
1VQL|1|0|A|2624
1VQL|1|0|C|2625
*
1VQL|1|0|G|2639
1VQL|1|0|U|2640
1VQL|1|0|C|2641

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 4

5'-R(*CP*CP*(PPU)*(TSE)*(DA)*CP*C)-3'

Chain A

50S ribosomal protein L2P