IL_1VQL_096

3D structure

PDB id

1VQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCSN' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GGUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

1VQL|1|0|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQL_096 not in the Motif Atlas

Homologous match to IL_4V9F_096

Geometric discrepancy: 0.0446

The information below is about IL_4V9F_096

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1VQL|1|0|G|2772
1VQL|1|0|G|2773
1VQL|1|0|U|2774
1VQL|1|0|A|2775
1VQL|1|0|A|2776
1VQL|1|0|G|2777
*
1VQL|1|0|C|2797
1VQL|1|0|G|2798
1VQL|1|0|A|2799
1VQL|1|0|A|2800
1VQL|1|0|A|2801
1VQL|1|0|C|2802

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P