IL_1VQL_110
3D structure
- PDB id
- 1VQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'DCSN' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GGAAUUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQL_110 not in the Motif Atlas
- Homologous match to IL_4V9F_111
- Geometric discrepancy: 0.0439
- The information below is about IL_4V9F_111
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
1VQL|1|0|G|1744
1VQL|1|0|G|1745
1VQL|1|0|A|1746
1VQL|1|0|A|1747
1VQL|1|0|U|1748
1VQL|1|0|U|1749
1VQL|1|0|C|1750
1VQL|1|0|G|1751
1VQL|1|0|G|1752
*
1VQL|1|0|C|2031
1VQL|1|0|U|2032
1VQL|1|0|G|2033
1VQL|1|0|U|2034
1VQL|1|0|C|2035
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain K
- 50S ribosomal protein L14P
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