IL_1VQM_031
3D structure
- PDB id
- 1VQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'DAN' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GGG*CCAUC
- Length
- 8 nucleotides
- Bulged bases
- 1VQM|1|0|G|869, 1VQM|1|0|C|881, 1VQM|1|0|A|882
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQM_031 not in the Motif Atlas
- Homologous match to IL_4V9F_030
- Geometric discrepancy: 0.1052
- The information below is about IL_4V9F_030
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_57881.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
1VQM|1|0|G|868
1VQM|1|0|G|869
1VQM|1|0|G|870
*
1VQM|1|0|C|880
1VQM|1|0|C|881
1VQM|1|0|A|882
1VQM|1|0|U|883
1VQM|1|0|C|884
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain A
- 50S ribosomal protein L2P
- Chain M
- 50S Ribosomal Protein L15E
- Chain R
- 50S ribosomal protein L22P
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