IL_1VQM_052
3D structure
- PDB id
- 1VQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'DAN' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CUAAG*CGAAAUG
- Length
- 12 nucleotides
- Bulged bases
- 1VQM|1|0|A|1486
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQM_052 not in the Motif Atlas
- Homologous match to IL_4V9F_052
- Geometric discrepancy: 0.045
- The information below is about IL_4V9F_052
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_10133.1
- Basepair signature
- cWW-L-R-tHW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
1VQM|1|0|C|1456
1VQM|1|0|U|1457
1VQM|1|0|A|1458
1VQM|1|0|A|1459
1VQM|1|0|G|1460
*
1VQM|1|0|C|1483
1VQM|1|0|G|1484
1VQM|1|0|A|1485
1VQM|1|0|A|1486
1VQM|1|0|A|1487
1VQM|1|0|U|1488
1VQM|1|0|G|1489
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 2
- 50S ribosomal protein L39e
- Chain A
- 50S ribosomal protein L2P
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