IL_1VQM_094

3D structure

PDB id

1VQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DAN' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UU*ACGUG

Length

7 nucleotides

Bulged bases

1VQM|1|0|U|2749

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQM_094 not in the Motif Atlas

Homologous match to IL_4V9F_095

Geometric discrepancy: 0.1051

The information below is about IL_4V9F_095

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_07171.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

1VQM|1|0|U|2732
1VQM|1|0|U|2733
*
1VQM|1|0|A|2746
1VQM|1|0|C|2747
1VQM|1|0|G|2748
1VQM|1|0|U|2749
1VQM|1|0|G|2750

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain P

50S ribosomal protein L19E

Chain X

50S ribosomal protein L31e